• Offered by Department of Mathematics
  • ANU College ANU Joint Colleges of Science
  • Classification Advanced
    Specialist
  • Course subject Mathematics
  • Areas of interest Mathematics
  • Academic career PGRD
  • Course convener
    • Dr Conrad Burden
  • Mode of delivery In Person
  • Offered in Second Semester 2014
    See Future Offerings

The course begins with a detailed discussion of sequence alignment algorithms that are critical for assessing the relatedness of DNA, RNA and amino acid sequences. We then proceed to studying Markov chains and hidden Markov models as important examples of biological models for such sequences. The main algorithms and several applications will be explained. Finally, a broad range of examples of applications of mathematics in biology, both at the molecular and macroscopic level, will be given. These may include current research being done at the ANU. The course is accompanied by computer lab sessions where we explore, in particular, major biological databases and sequence similarity search.

Learning Outcomes

Upon successful completion, students will have the knowledge and skills to:

On satisfying the requirements of this course, students will have the knowledge and skills to:

1. Understand basic models for the evolution of biological sequences.
2. Understand and apply basic probabilistic concepts such as probability spaces, conditional probability, Markov chains, and stationary distributions.
3. Understand the main principles of mathematical modelling in biology.

Indicative Assessment

Assignment 1: 25% Assignment 2: 25% Take home exam: 35% Home work: 15%

The ANU uses Turnitin to enhance student citation and referencing techniques, and to assess assignment submissions as a component of the University's approach to managing Academic Integrity. While the use of Turnitin is not mandatory, the ANU highly recommends Turnitin is used by both teaching staff and students. For additional information regarding Turnitin please visit the ANU Online website.

Requisite and Incompatibility

enrolled in MMathSci

You will need to contact the Department of Mathematics to request a permission code to enrol in this course.

Fees

Tuition fees are for the academic year indicated at the top of the page.  

If you are a domestic graduate coursework or international student you will be required to pay tuition fees. Students continuing in their current program of study will have their tuition fees indexed annually from the year in which you commenced your program. Further information for domestic and international students about tuition and other fees can be found at Fees.

Student Contribution Band:
2
Unit value:
6 units

If you are an undergraduate student and have been offered a Commonwealth supported place, your fees are set by the Australian Government for each course. At ANU 1 EFTSL is 48 units (normally 8 x 6-unit courses). You can find your student contribution amount for each course at Fees.  Where there is a unit range displayed for this course, not all unit options below may be available.

Units EFTSL
6.00 0.12500
Domestic fee paying students
Year Fee
1994-2003 $1650
2004 $2160
2005 $2520
2006 $2520
2007 $2520
2008 $2916
2009 $2916
2010 $2916
2011 $2946
2012 $2946
2013 $2946
2014 $2946
International fee paying students
Year Fee
1994-2003 $3606
2004 $3618
2005 $3618
2006 $3618
2007 $3618
2008 $3618
2009 $3618
2010 $3750
2011 $3756
2012 $3756
2013 $3756
2014 $3762
Note: Please note that fee information is for current year only.

Offerings, Dates and Class Summary Links

The list of offerings for future years is indicative only.
Class summaries, if available, can be accessed by clicking on the View link for the relevant class number.

Second Semester

Class number Class start date Last day to enrol Census date Class end date Mode Of Delivery Class Summary
7705 21 Jul 2014 08 Aug 2014 31 Aug 2014 30 Oct 2014 In Person N/A

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