This course will extend the Genetics of Human Disease I course, focussing on more advanced topics of human genetics and disease. We will examine the genetics of non-Mendelian disorders, including those exhibiting sex-linked, mitochondrial, transgenerational and complex modes of inheritance. These will be studied at both conceptual and disease-specific levels, with additional focus on the use of genetics to elucidate disease mechanism and develop therapies. We will also present the latest advances and representative examples pertaining to other advanced genetic concepts such as genome evolution and gene environment interactions.

We will cover topics including:

• Complex trait genetics in Non-Mendelian inherited diseases, including pulmonary disease, vision disorders,

diabetes and cardiovascular disease.

• Gene-environment interactions

• Neurogenetics

• Impact of disease on genome evolution

• Genetic approaches to treating disease

• Genome editing technologies, including CRISPR-Cas9.

Learning Outcomes

Upon successful completion, students will have the knowledge and skills to:

1. Explain and categorise how genetic mutations cause disease and variable phenotypes in humans.
2. Describe the genetic basis of specific diseases, and how genetics assists in understanding pathophysiology and treatment options.
3. Explain the concept and evidential basis of selective pressure, and illustrate how selection affects disease gene frequency and inheritance.
4. Access and utilise web-based and literature-based resources in the field of human disease genetics and pathophysiology.
5. Understand and apply theories in the bioinformatic study of genes and disease-causing mutations.

Staff Feedback

Students will be given feedback in the following forms in this course:

• written comments
• verbal comments
• feedback to whole class, groups, individuals, focus group etc

Student Feedback

ANU is committed to the demonstration of educational excellence and regularly seeks feedback from students. Students are encouraged to offer feedback directly to their Course Convener or through their College and Course representatives (if applicable). The feedback given in these surveys is anonymous and provides the Colleges, University Education Committee and Academic Board with opportunities to recognise excellent teaching, and opportunities for improvement. The Surveys and Evaluation website provides more information on student surveys at ANU and reports on the feedback provided on ANU courses.

Class Schedule

Week/Session	Summary of Activities	Assessment
1	Overview This course will explore in detail several different human genetic diseases, and advanced concepts in human genetics. You will learn about: Diseases affecting several important systems and cells of the body, including the lung, the brain and neurological system, vision, erythrocytes and platelets, and metabolic processes including glucose, iron and amino acid homeostasis. In each disease, details on the underlying biology, and how genetics helps our understanding of pathophysiology, management and treatment. Examples of gene-environment interactions, human genetic evolution, complex and transgenerational modes of inheritance, and new concepts in genome function. Conceptual and introductory practical training in important human genomics technologies, including gene-editing (CRIPSR-Cas9) and computational approaches for mutation detection. Individual topics will be taught by research group leaders working at the JCSMR who are experts in their topic fields.
2	COURSE SCHEDULE is tentative and subject to change Lectures and Tutorials: Topics as below. Timetable will be posted and updated continually: please refer to Wattle for updated schedules.
3	Topics The course is comprised of eleven separate topics, listed below. Each topic will be taught as a combination of three lectures (1 hour each) and one tutorial (2 hours). Tutorials comprise of either classroom-based discussions, or computer and laboratory-based practicals, and will be lead by the respective topic lecturer. All topics will be assessed by online multi-choice questions set after each topic, and two separate exams set for mid-semester and end of semester. Pulmonary diseases + Assignment #1 Erythrocytic diseases + Assignment #2 Metabolic diseases Inherited bleeding disorders Diabetes Vision Genetics Genetic Brain Disorders DNA repair and associated diseases. RNA splicing Bioinformatics for disease gene identification Genome editing	Asessment Task 1: Assignment #1: Genetic modifiers of pulmonary disease. Asessment Task 2: Assignment #2: Evolutionary selection of erythrocytic diseases by malaria. Assessment Task 3: Online multiple choice questions on eleven topics Assessment Task 4 Mid-semester exam (topics presented in Weeks 1 - 6) Assessment Task 5 Final exam (topics presented in Weeks 8 - 12)

Assessment Summary

Assessment task	Value	Due Date	Return of assessment	Learning Outcomes
Assignment #1: Genetic modifiers of pulmonary disease.	11 %	*	*	1,2,5
Assignment #2: Evolutionary selection of erythrocytic diseases by malaria.	12 %	*	*	2,6
Online multiple choice questions on each topic	11 %	*	*	1,2,3,4,5,6
Mid-semester exam	36 %	*	*	1,2,3,4,5,6
End-of-semester (final) exam	30 %	05/11/2020	03/12/2020	1,2,3,4,5

* If the Due Date and Return of Assessment date are blank, see the Assessment Tab for specific Assessment Task details

Policies

ANU has educational policies, procedures and guidelines, which are designed to ensure that staff and students are aware of the University’s academic standards, and implement them. Students are expected to have read the Academic Misconduct Rule before the commencement of their course. Other key policies and guidelines include:

• Student Assessment (Coursework) Policy and Procedure
• Special Assessment Consideration Policy and General Information 
• Student Surveys and Evaluations
• Deferred Examinations
• Student Complaint Resolution Policy and Procedure

Assessment Requirements

The ANU is using Turnitin to enhance student citation and referencing techniques, and to assess assignment submissions as a component of the University's approach to managing Academic Integrity. For additional information regarding Turnitin please visit the Academic Integrity . In rare cases where online submission using Turnitin software is not technically possible; or where not using Turnitin software has been justified by the Course Convener and approved by the Associate Dean (Education) on the basis of the teaching model being employed; students shall submit assessment online via ‘Wattle’ outside of Turnitin, or failing that in hard copy, or through a combination of submission methods as approved by the Associate Dean (Education). The submission method is detailed below.

Moderation of Assessment

Marks that are allocated during Semester are to be considered provisional until formalised by the College examiners meeting at the end of each Semester. If appropriate, some moderation of marks might be applied prior to final results being released.

Participation

Students are expected to actively participate through the course, particularly with respect to attendance/engagement at lectures and tutorials, including on-line discussion via Wattle. Attendance at the tutorials is a course requirement and will be recorded.

To pass this course you must achieve an overall mark of 50% or more, including all assessments. Students are not required to pass the written exam. Students who achieve a final result of 45-49% for the course will be offered supplementary exam.

Refer to ANU Supplementary exams rules at the following site: http://www.anu.edu.au/students/program-administration/assessments-exams/supplementary-exams.

If the supplementary examination is passed, the final result will be 50PS. If the supplementary examination is failed the final result will be N.”

Examination(s)

Mid-Semester Exam is scheduled for Week 7. The date time and location will confirmed by course convenor and at the Wattle site.

Final Exam: The date range in the Assessment Summary indicates the start of the end of semester exam period and the date official end of semester results are released on ISIS. Please check the ANU final Examination Timetable http://www.anu.edu.au/students/program-administration/assessments-exams/examination-timetable to confirm the date, time and location of the Final Exam

Assessment Task 1

Assignment #1: Genetic modifiers of pulmonary disease.

1. Read and critically analyse prescribed research papers on the assignment topic.
2. Provide and submit written answers to a set of questions based on the analysis and interpretation of these papers.
3. Attend and participate in a lecturer-lead Assignment Discussion tutorial. The students and lecturer will discuss their assignment answers, and expand on the implications and future directions of the topic. This will be scheduled in a 2 hour tutorial session (Refer to Wattle site for exact date and time).

Value: 11%

Estimated submission due date: Two days before the Assignment Discussion tutorial.

Estimated return date: One week after submission.

Please refer to the Wattle site for the Assignment submission and Discussion dates & times.

Rubric

Assessment Task 2

Assignment #2: Evolutionary selection of erythrocytic diseases by malaria.

1. Read and understand prescribed research papers on the assignment topic.
2. Provide and submit written answers to a set of questions based on the analysis and interpretation of these papers.
3. Attend and participate in a lecturer-lead Assignment Discussion tutorial. The students and lecturer will discuss their assignment answers, and expand on the implications and future directions of the topic. This will be scheduled in a 2 hour tutorial session (Refer to wattle site for exact date and time).

Value: 12%

Estimated submission due date: Two days before the Assignment Discussion tutorial.

Estimated return date: One week after submission.

Please refer to the Wattle site for the Assignment submission and Discussion dates & times.

Assessment Task 3

Online multiple choice questions on each topic

Five multiple choice questions will be posted on Wattle at the beginning of each topic. Students are required to answer the questions within 1 week of posting. There will be eleven sets of questions, one set for each topic.

Value: 1% per topic for completing and submitting all questions by due date (11% total for the course).

Estimated due date: Monday evening following each topic.

Estimated return date: Two days after submission.

Assessment Task 4

Mid-semester exam

Students will be required to answer six questions (approximately 1 page each) over 2 hrs. Each question relates to the topics taught during Weeks 1 - 6. All of the questions must be attempted.

Example questions will be provided in the lead up to the exam. The exam question will be one of the example questions. Students are therefore encouraged to revise and prepare answers for each example question for their study.

The exam will be held during Week 7 in place of the scheduled tutorial. Check Wattle for the date and time.

There will be no lectures scheduled for Week 7 to assist with study time.

Value: 36%

Assessment Task 5

End-of-semester (final) exam

Students will be required to answer five questions (approximately 1 page each) over 2 hrs. Each question relates to the topics taught during Weeks 8 - 12. All of the questions must be attempted.

Example questions will be provided in the lead up to the exam. The exam question will be one of the example questions. Students are therefore encouraged to revise and prepare answers for each example question for their study.

The exam will be held during the scheduled University final exam period

Value: 30%

Academic Integrity

Academic integrity is a core part of the ANU culture as a community of scholars. At its heart, academic integrity is about behaving ethically, committing to honest and responsible scholarly practice and upholding these values with respect and fairness.

The ANU commits to assisting all members of our community to understand how to engage in academic work in ways that are consistent with, and actively support academic integrity. The ANU expects staff and students to be familiar with the academic integrity principle and Academic Misconduct Rule, uphold high standards of academic integrity and act ethically and honestly, to ensure the quality and value of the qualification that you will graduate with.

The Academic Misconduct Rule is in place to promote academic integrity and manage academic misconduct. Very minor breaches of the academic integrity principle may result in a reduction of marks of up to 10% of the total marks available for the assessment. The ANU offers a number of online and in person services to assist students with their assignments, examinations, and other learning activities. Visit the Academic Skills website for more information about academic integrity, your responsibilities and for assistance with your assignments, writing skills and study.

Online Submission

You will be required to electronically sign a declaration as part of the submission of your assignment. Please keep a copy of the assignment for your records. Unless an exemption has been approved by the Associate Dean (Education) submission must be through Turnitin.

Hardcopy Submission

For some forms of assessment (hand written assignments, art works, laboratory notes, etc.) hard copy submission is appropriate when approved by the Associate Dean (Education). Hard copy submissions must utilise the Assignment Cover Sheet. Please keep a copy of tasks completed for your records.

Late Submission

Individual assessment tasks may or may not allow for late submission. Policy regarding late submission is detailed below:

• Late submission not permitted. If submission of assessment tasks without an extension after the due date is not permitted, a mark of 0 will be awarded. Late submission will not be permitted for the online quizzes.
• Late submission permitted. Late submission of assessment tasks without an extension are penalised at the rate of 5% of the possible marks available per working day or part thereof. Late submission of assessment tasks is not accepted after 10 working days after the due date, or on or after the date specified in the course outline for the return of the assessment item. Late submission is not accepted for take-home examinations.

Referencing Requirements

Accepted academic practice for referencing sources that you use in presentations can be found via the links on the Wattle site, under the file named “ANU and College Policies, Program Information, Student Support Services and Assessment”. Alternatively, you can seek help through the Students Learning Development website.

Returning Assignments

Assignments will be returned to students via Wattle.

The exact return date will be posted on the Wattle site.

Extensions and Penalties

Extensions and late submission of assessment pieces are covered by the Student Assessment (Coursework) Policy and Procedure. Extensions may be granted for assessment pieces that are not examinations or take-home examinations. If you need an extension, you must request an extension in writing on or before the due date. If you have documented and appropriate medical evidence that demonstrates you were not able to request an extension on or before the due date, you may be able to request it after the due date.

Resubmission of Assignments

Resubmission of assignments will not be allowed.

Privacy Notice

The ANU has made a number of third party, online, databases available for students to use. Use of each online database is conditional on student end users first agreeing to the database licensor’s terms of service and/or privacy policy. Students should read these carefully. In some cases student end users will be required to register an account with the database licensor and submit personal information, including their: first name; last name; ANU email address; and other information.
In cases where student end users are asked to submit ‘content’ to a database, such as an assignment or short answers, the database licensor may only use the student’s ‘content’ in accordance with the terms of service – including any (copyright) licence the student grants to the database licensor. Any personal information or content a student submits may be stored by the licensor, potentially offshore, and will be used to process the database service in accordance with the licensors terms of service and/or privacy policy.
If any student chooses not to agree to the database licensor’s terms of service or privacy policy, the student will not be able to access and use the database. In these circumstances students should contact their lecturer to enquire about alternative arrangements that are available.

Distribution of grades policy

Academic Quality Assurance Committee monitors the performance of students, including attrition, further study and employment rates and grade distribution, and College reports on quality assurance processes for assessment activities, including alignment with national and international disciplinary and interdisciplinary standards, as well as qualification type learning outcomes.

Since first semester 1994, ANU uses a grading scale for all courses. This grading scale is used by all academic areas of the University.

Support for students

The University offers students support through several different services. You may contact the services listed below directly or seek advice from your Course Convener, Student Administrators, or your College and Course representatives (if applicable).

• ANU Health, safety & wellbeing for medical services, counselling, mental health and spiritual support
• ANU Diversity and inclusion for students with a disability or ongoing or chronic illness
• ANU Dean of Students for confidential, impartial advice and help to resolve problems between students and the academic or administrative areas of the University
• ANU Academic Skills and Learning Centre supports you make your own decisions about how you learn and manage your workload.
• ANU Counselling Centre promotes, supports and enhances mental health and wellbeing within the University student community.
• ANUSA supports and represents undergraduate and ANU College students
• PARSA supports and represents postgraduate and research students