- Class Number 3690
- Term Code 3030
- Class Info
- Unit Value 6 units
- Mode of Delivery In Person
- Prof Barry Pogson
- Dr Xin Hou
- Dr Adam Carroll
- Adam Reddiex
- Dr Carolyn Behm
- Dr Diep Ganguly
- Prof Guillaume Tcherkez
- Dr Melanie Carmody
- Nay Chi Khin
- Class Dates
- Class Start Date 24/02/2020
- Class End Date 05/06/2020
- Census Date 08/05/2020
- Last Date to Enrol 02/03/2020
The aim of this course is to teach genomics, transcriptomics, proteomics, metabolomics and phonemics using model organisms representing plants and animals. The course will cover recent developments in genomics, gene expression and small RNAs, synthetic biology, epigenetics, proteomics, fast-forward genetics and next-generation mapping. An objective of the course is to develop skills in experimental design within the context of learning about biology including: regulation of transcription and translation, stress response, signal transduction and the engineering and regulation of metabolic pathways.
Note: Graduate students attend joint classes with undergraduates but are assessed separately.
Upon successful completion, students will have the knowledge and skills to:
- Describe recent advances in genomics, transcriptomics, proteomics and metabolomics.
- Explain some of the current genomics technologies and illustrate how these can be used to study gene function.
- Obtain and analyse information and data relating to specific genes using general and plant-specific databases, proteomics and metabolomics online portals, next generation sequencing tools and next generation mapping portals.
- Locate and critically evaluate current scientific literature and discuss the important findings of these publications in writing.
- Perform a range of practical techniques including DNA extraction and sequencing, RT-PCR reporter gene assay, metabolomics and genetic mapping.
- Design a set of experiments to address a particular biological question.
All lecturers are experts in the field that they are lecturing in. The lecture material presented draws from new research providing current knowledge and examples for the fundamental biological concepts taught. This exposes students to present-day techniques and innovation, which connects them to current ideas in the science field. Furthermore, the students have the opportunity to engage with a range of scientists at different stages of their career, allowing an environment for students to make connections for potential future research projects.
Additionally, the lectures complement the practical component of the course, which aims to foster and teach skills required in a research environment. These skills range from basic practical techniques, to learning how to critically analyse and discuss the theory behind the science, all while rationalising and applying these to results obtained in the practical.
Students will be given feedback in the following forms in this course:
- Written comments
- Feedback to the whole class or to groups
Student FeedbackANU is committed to the demonstration of educational excellence and regularly seeks feedback from students. Students are encouraged to offer feedback directly to their Course Convener or through their College and Course representatives (if applicable). The feedback given in these surveys is anonymous and provides the Colleges, University Education Committee and Academic Board with opportunities to recognise excellent teaching, and opportunities for improvement. The Surveys and Evaluation website provides more information on student surveys at ANU and reports on the feedback provided on ANU courses.
Adjustments to delivery in 2020
Course delivery and assessment in 2020 was adjusted due to the COVID-19 pandemic. Any information below that replaces what was published in the Class Summary for Semester 1, 2020 was approved by the Associate Dean Education (as is required after 10% commencement of a course). Where an activity or assessment is not referenced below, it remains unchanged.
- Lectures: recorded lectures from 2019 were available through Wattle. During scheduled lecture times, a convenor held a Zoom meeting for discussion.
- Practicals were done online. Results were provided to students followed by a Zoom meeting
- Two-Day workshop / HPO assignment was a one day, online workshop.
- Adjustments were made to assignment due dates; for details see the course Wattle site.
- Midterm Exam and Final Exam were online on Wattle.
|Week/Session||Summary of Activities||Assessment|
|1||Week 1 Lecture: Course Overview Lectures: Transcription|
|2||Week 2 Lectures: Genes and Genomes|
|3||Week 3 Lecture: Small RNA Lectures: Epigenetics Lab I: Functional Genomics & small RNAs|
|4||Week 4 Lecture: Epigenetics Lectures: Proteomics & Metabolomics Lab I: Functional Genomics & small RNAs|
|5||Week 5 Lectures: Proteomics & Metabolomics Lab I: Functional Genomics & small RNAs|
|6||Week 6 Lab II: Proteomics & Metabolomics||Mid-semester Exam on Monday 31/03/2020|
|7||Mid-semester Break HPO workshops on 6th and 7th April 2020|
|8||Week 7 Lab II: Proteomics & Metabolomics||Lab I Assignment Due 11PM Wed 22 Apr 2020|
|9||Week 8 Lectures: Forward Genetics and Plants Lab II: Proteomics & Metabolomics||HPO Assignment Due 5PM Fri 1 May 2020|
|10||Week 9 Lectures: Genomes, populations and natural variation Lecture: Synthetic Biology Lab III: Cell Signaling||Lab II Assignment Due 11PM Fri 8 May 2020|
|11||Week 10 Lectures: Synthetic Biology Lab III: Cell signaling|
|12||Week 11 Lectures: C.elegans Lab III: Cell signaling|
|13||?Week 12 Lecture: C.elegans Revision tutorial and Biology Research Project||Lab III Assignment Due 11PM Fri 29 May 2020|
No need to register for tutorials.
|Assessment task||Value||Due Date||Return of assessment||Learning Outcomes|
|Mid-semester exam||5 %||31/03/2020||20/04/2020||1, 2|
|Lab I Assignment: Functional Genomics and Small RNAs report||17 %||22/04/2020||06/05/2020||1, 2, 3, 4, 5|
|Two-Day workshop / HPO assignment||10 %||01/05/2020||14/05/2020||1, 2, 3, 4, 5|
|Lab II Assignment: Metabolomics and Proteomics assignment||10 %||08/05/2020||15/05/2020||1, 2, 3, 4, 5|
|Lab III Assignment: The Cell Signalling - Phenotyping and Gene Discovery report||18 %||29/05/2020||11/06/2020||1, 2, 3, 4, 5|
|Final Exam||40 %||04/06/2020||02/07/2020||1, 2, 6|
* If the Due Date and Return of Assessment date are blank, see the Assessment Tab for specific Assessment Task details
PoliciesANU has educational policies, procedures and guidelines, which are designed to ensure that staff and students are aware of the University’s academic standards, and implement them. Students are expected to have read the Academic Misconduct Rule before the commencement of their course. Other key policies and guidelines include:
Assessment RequirementsThe ANU is using Turnitin to enhance student citation and referencing techniques, and to assess assignment submissions as a component of the University's approach to managing Academic Integrity. For additional information regarding Turnitin please visit the ANU Online website Students may choose not to submit assessment items through Turnitin. In this instance you will be required to submit, alongside the assessment item itself, hard copies of all references included in the assessment item.
Moderation of AssessmentMarks that are allocated during Semester are to be considered provisional until formalised by the College examiners meeting at the end of each Semester. If appropriate, some moderation of marks might be applied prior to final results being released.
Attendance at all labs is compulsory except where arrangements have been made with the lab coordinator or course convener with provision of medical certificates etc, as appropriate. Assessment penalties may be applied if no satisfactory explanation is provided.
You must pass both the final exam and the practical components (i.e. Assessment Tasks 2, 3, 4 and 5) to pass the course.
Please note, that where a date range is used in the Assessment Summary in relation to exams, the due date and return date for mid-semester exams indicate the approximate timeframe in which the exam will be held; the due and return date for end of semester exams indicate the approximate timeframe in which the exam will be held and the date official end of Semester results are released on ISIS. Students should consult the course wattle site and the ANU final examination timetable to confirm the date, time and venue of the exam.
Assessment Task 1
Learning Outcomes: 1, 2
This short multiple choice mid-term test is for you to demonstrate your understanding of the first block of lectures (i.e. Transgenic, Epigenetics, Transcription, Proteomics and Metabolomics).
Please check the course Wattle site and the ANU Examination Timetable to confirm the date, time and location of the mid semester exam.
Assessment Task 2
Learning Outcomes: 1, 2, 3, 4, 5
Lab I Assignment: Functional Genomics and Small RNAs report
The objective of this assignment is for you to demonstrate your understanding the biology of small RNAs and the technical approaches used to study these small RNAs. This assignment also aims to assess your proficiency in science writing, data analysis, and critical evaluation of your results in conjunction with the literature, experiment design and lateral thinking.
Assessment Task 3
Learning Outcomes: 1, 2, 3, 4, 5
Two-Day workshop / HPO assignment
This is a series of questions centred on the two day HPO lab workshop, which aims to assess your understanding of the techniques and theory used in the workshop.
Assessment Task 4
Learning Outcomes: 1, 2, 3, 4, 5
Lab II Assignment: Metabolomics and Proteomics assignment
The objective of this assignment is for you to demonstrate your understanding of the techniques used in Metabolomics and Proteomics. This assignment also aims to assess your proficiency in science writing, data analysis, and critical evaluation of your results in conjunction with the practical.
Assessment Task 5
Learning Outcomes: 1, 2, 3, 4, 5
Lab III Assignment: The Cell Signalling - Phenotyping and Gene Discovery report
The objective of this assignment is for you to demonstrate your understanding of the principles of mapping mutations to the genome using molecular techniques, and phenotyping of mutants to understand gene function. This assignment also aims to assess your proficiency in science writing, data analysis, and critical evaluation of your results in conjunction with the literature, experiment design and lateral thinking.
Assessment Task 6
Learning Outcomes: 1, 2, 6
This exam consists of both multiple choice questions and short answer questions, to demonstrate your understanding of the content and general principles of the course lectures.
Please check the ANU final Examination Timetable to confirm the date, time and location of the end of semester exam.
Academic IntegrityAcademic integrity is a core part of our culture as a community of scholars. At its heart, academic integrity is about behaving ethically. This means that all members of the community commit to honest and responsible scholarly practice and to upholding these values with respect and fairness. The Australian National University commits to embedding the values of academic integrity in our teaching and learning. We ensure that all members of our community understand how to engage in academic work in ways that are consistent with, and actively support academic integrity. The ANU expects staff and students to uphold high standards of academic integrity and act ethically and honestly, to ensure the quality and value of the qualification that you will graduate with. The University has policies and procedures in place to promote academic integrity and manage academic misconduct. Visit the following Academic honesty & plagiarism website for more information about academic integrity and what the ANU considers academic misconduct. The ANU offers a number of services to assist students with their assignments, examinations, and other learning activities. The Academic Skills and Learning Centre offers a number of workshops and seminars that you may find useful for your studies.
Online SubmissionThe ANU uses Turnitin to enhance student citation and referencing techniques, and to assess assignment submissions as a component of the University's approach to managing Academic Integrity. While the use of Turnitin is not mandatory, the ANU highly recommends Turnitin is used by both teaching staff and students. For additional information regarding Turnitin please visit the ANU Online website.
Hard copy submissions must utilise the Assignment Cover Sheet. Please keep a copy of tasks completed for your records.
Late submission of assessment tasks without an extension are penalised at the rate of 5% of the possible marks available per working day or part thereof. Late submission of assessment tasks is not accepted after 10 working days after the due date, or on or after the date specified in the course outline for the return of the assessment item. Late submission is not accepted for take-home examinations.
Referencing RequirementsAccepted academic practice for referencing sources that you use in presentations can be found via the links on the Wattle site, under the file named “ANU and College Policies, Program Information, Student Support Services and Assessment”. Alternatively, you can seek help through the Students Learning Development website.
Marks and feedback of assessments 2, 3, 4 and 5 will be available on Turnitin by the specified dates. Marks of assessments 1 and 6 will be be available by the specified dates and students can view and discuss the exam papers with course convener.
Extensions and PenaltiesExtensions and late submission of assessment pieces are covered by the Student Assessment (Coursework) Policy and Procedure The Course Convener may grant extensions for assessment pieces that are not examinations or take-home examinations. If you need an extension, you must request an extension in writing on or before the due date. If you have documented and appropriate medical evidence that demonstrates you were not able to request an extension on or before the due date, you may be able to request it after the due date.
Resubmission of Assignments
Resubmission of assignments is not accepted.
Distribution of grades policyAcademic Quality Assurance Committee monitors the performance of students, including attrition, further study and employment rates and grade distribution, and College reports on quality assurance processes for assessment activities, including alignment with national and international disciplinary and interdisciplinary standards, as well as qualification type learning outcomes. Since first semester 1994, ANU uses a grading scale for all courses. This grading scale is used by all academic areas of the University.
Support for studentsThe University offers students support through several different services. You may contact the services listed below directly or seek advice from your Course Convener, Student Administrators, or your College and Course representatives (if applicable).
- ANU Health, safety & wellbeing for medical services, counselling, mental health and spiritual support
- ANU Diversity and inclusion for students with a disability or ongoing or chronic illness
- ANU Dean of Students for confidential, impartial advice and help to resolve problems between students and the academic or administrative areas of the University
- ANU Academic Skills and Learning Centre supports you make your own decisions about how you learn and manage your workload.
- ANU Counselling Centre promotes, supports and enhances mental health and wellbeing within the University student community.
- ANUSA supports and represents undergraduate and ANU College students
- PARSA supports and represents postgraduate and research students
Please contact Lab Coordinator Nay Chi Khin: email@example.com, if you are interested in doing a research project in Genomics.
Prof Barry Pogson
Dr Adam Carroll
Dr Carolyn Behm
Dr Diep Ganguly
Prof Guillaume Tcherkez
Dr Melanie Carmody