This course will investigate host responses to microbial infections: innate reactions including the complement system, and phagocytic cells; adaptive immunity including clonal selection theory, antibodies, roles of B and T lymphocytes, antigens and antigen presentation, and molecular genetics of antigen receptors; bacterial diseases, focussing on molecular explanations of pathogenesis and virulence of selected pathogens and toxins; viruses and viral infections with an emphasis on replication strategies, host and tissue specificity, effects of viruses on cells (cell death, transformation, latency), and determinants of viral virulence. 

Note: Graduate students attend joint classes with undergraduates but will be assessed separately

Learning Outcomes

Upon successful completion, students will have the knowledge and skills to:

1. Understand basic concepts in immunology, virology and microbiology.
2. Be able to apply this knowledge in both scientific and general settings.
3. Obtain laboratory skills in microbiology, immunology and virology.
4. Be able to source, understand and critically evaluate published literature relating to immunology, virology and microbiology.
5. Be able to analyse and interpret laboratory results, relate them to the published literature and write them up clearly and concisely.
6. Be able to give a competent oral presentation involving an in-depth discussion of a prepared topic.

Research-Led Teaching

• BIOL6141 is taught by four lecturers, all of whom are actively involved in research and have international reputations in the specific disciplines they will be lecturing in.
• BIOL6141 has a substantial practical component designed to train students in practical, analytical and writing skills required for research.

Additional Course Costs

Personal Protective Equipment (PPE) is required in the laboratory.

Safety glasses must be purchased. Lab coats will be provided, and do not need to be purchased for this course. You must wear closed shoes to be admitted to the laboratory.

Examination Material or equipment

No extra materials may be brought into the examination room.

Required Resources

The Practical manual will provided.

Recommended Resources

Recommended texts:

• Janeway's Immunobiology, Murphy K. Garland Science, 10th edition 2022.

• Mim's Medical Microbiology and Immunology, Goering R., Elsevier, 6th edition 2019

• Mim’s Pathogenesis of Infectious Disease. Nash A. et al Academic Press, 6th edition 2015

• Cellular and Molecular Immunology, Abbas A.K. et al. Saunders/Elsevier, 10th edition 2022.

Reference text:

• Field's Virology. Fields B.N. et al. Lippincott, Williams and Wilkins. 5th Ed. 2007

All texts are available on two hour reserve, or in electronic book format from the library.

Additional useful texts are also available on reserve in the library. A link to all of these resources is provided in the Wattle on-line site for this course.

Recommended student system requirements 

ANU courses commonly use a number of online resources and activities including:

• video material, similar to YouTube, for lectures and other instruction
• two-way video conferencing for interactive learning
• email and other messaging tools for communication
• interactive web apps for formative and collaborative activities
• print and photo/scan for handwritten work
• home-based assessment.

To fully participate in ANU learning, students need:

• A computer or laptop. Mobile devices may work well but in some situations a computer/laptop may be more appropriate.
• Webcam
• Speakers and a microphone (e.g. headset)
• Reliable, stable internet connection. Broadband recommended. If using a mobile network or wi-fi then check performance is adequate.
• Suitable location with minimal interruptions and adequate privacy for classes and assessments.
• Printing, and photo/scanning equipment

For more information please see https://www.anu.edu.au/students/systems/recommended-student-system-requirements

Staff Feedback

Students will be given feedback in the following forms in this course:

• written comments
• verbal comments
• feedback to whole class, groups, individuals, focus group etc

Student Feedback

ANU is committed to the demonstration of educational excellence and regularly seeks feedback from students. Students are encouraged to offer feedback directly to their Course Convener or through their College and Course representatives (if applicable). Feedback can also be provided to Course Conveners and teachers via the Student Experience of Learning & Teaching (SELT) feedback program. SELT surveys are confidential and also provide the Colleges and ANU Executive with opportunities to recognise excellent teaching, and opportunities for improvement.

Class Schedule

Week/Session	Summary of Activities	Assessment
1	Most weeks will include two lectures and one practical session	Up to 5 assessments plus one exam Assessments include: 4 practical reports, and one advanced assessment task which is typically presented as a seminar.

Assessment Summary

Assessment task	Value	Learning Outcomes
Practical Reports	40 %	2,3,4,5
Advanced assessment task.	15 %	1,2,4,6
Exam	45 %	1,2

* If the Due Date and Return of Assessment date are blank, see the Assessment Tab for specific Assessment Task details

Policies

ANU has educational policies, procedures and guidelines , which are designed to ensure that staff and students are aware of the University’s academic standards, and implement them. Students are expected to have read the Academic Integrity Rule before the commencement of their course. Other key policies and guidelines include:

• Academic Integrity Policy and Procedure
• Student Assessment (Coursework) Policy and Procedure
• Special Assessment Consideration Guideline and General Information 
• Student Surveys and Evaluations
• Deferred Examinations
• Student Complaint Resolution Policy and Procedure
• Code of practice for teaching and learning

Assessment Requirements

The ANU is using Turnitin to enhance student citation and referencing techniques, and to assess assignment submissions as a component of the University's approach to managing Academic Integrity. For additional information regarding Turnitin please visit the Academic Skills website. In rare cases where online submission using Turnitin software is not technically possible; or where not using Turnitin software has been justified by the Course Convener and approved by the Associate Dean (Education) on the basis of the teaching model being employed; students shall submit assessment online via ‘Wattle’ outside of Turnitin, or failing that in hard copy, or through a combination of submission methods as approved by the Associate Dean (Education). The submission method is detailed below.

Moderation of Assessment

Marks that are allocated during Semester are to be considered provisional until formalised by the College examiners meeting at the end of each Semester. If appropriate, some moderation of marks might be applied prior to final results being released.

Participation

Attendance at practical classes is compulsory, and will be recorded.

Examination(s)

Students must pass the exam to pass the course.

Please note, that where a date range is used in the Assessment Summary in relation to exams, the due date and return date for mid-semester exams indicate the approximate timeframe in which the exam will be held; the due and return date for end of semester exams indicate the approximate timeframe in which the exam will be held and the date official end of Semester results are released on ISIS. Students should consult the course wattle site and the ANU final examination timetable to confirm the date, time and venue of the exam.

Assessment Task 1

Practical Reports

Four (4) practical reports are due throughout the semester.

Details, word limits, presentation requirements, due dates and the assessment rubric will be provided in the practical manual or the wattle site.

Assessment Task 2

Advanced assessment task.

The details of the task, which usually replaces the last 5 practical sessions, will be determined in consultation between Masters students and the convenor.

In the past, this has involved an in-depth analysis of a recent, high impact publication in immunology, similar to a "journal club", presented as a seminar.

Assessment Task 3

Exam

Please check published ANU exam timetable for date and time.

The date range indicates the start of the end of semester exam period and the date official end of semester results are released on ISIS. Please check the course Wattle site and the ANU final Examination Timetable http://www.anu.edu.au/students/program-administration/assessments-exams/examination-timetable to confirm the date, time and location of the exam.

Academic Integrity

Academic integrity is a core part of the ANU culture as a community of scholars. The University’s students are an integral part of that community. The academic integrity principle commits all students to engage in academic work in ways that are consistent with, and actively support, academic integrity, and to uphold this commitment by behaving honestly, responsibly and ethically, and with respect and fairness, in scholarly practice.

The University expects all staff and students to be familiar with the academic integrity principle, the Academic Integrity Rule 2021, the Policy: Student Academic Integrity and Procedure: Student Academic Integrity, and to uphold high standards of academic integrity to ensure the quality and value of our qualifications.

The Academic Integrity Rule 2021 is a legal document that the University uses to promote academic integrity, and manage breaches of the academic integrity principle. The Policy and Procedure support the Rule by outlining overarching principles, responsibilities and processes. The Academic Integrity Rule 2021 commences on 1 December 2021 and applies to courses commencing on or after that date, as well as to research conduct occurring on or after that date. Prior to this, the Academic Misconduct Rule 2015 applies.

 

The University commits to assisting all students to understand how to engage in academic work in ways that are consistent with, and actively support academic integrity. All coursework students must complete the online Academic Integrity Module (Epigeum), and Higher Degree Research (HDR) students are required to complete research integrity training. The Academic Integrity website provides information about services available to assist students with their assignments, examinations and other learning activities, as well as understanding and upholding academic integrity.

Online Submission

You will be required to electronically sign a declaration as part of the submission of your assignment. Please keep a copy of the assignment for your records. Unless an exemption has been approved by the Associate Dean (Education) submission must be through Turnitin.

Hardcopy Submission

For some forms of assessment (hand written assignments, art works, laboratory notes, etc.) hard copy submission is appropriate when approved by the Associate Dean (Education). Hard copy submissions must utilise the Assignment Cover Sheet. Please keep a copy of tasks completed for your records.

Late Submission

Late submission not permitted. Assessment tasks submitted after the due date (without a prior extension being granted) will be awarded a mark of 0.

Feedback can be given, to maximise student learning.

Referencing Requirements

The Academic Skills website has information to assist you with your writing and assessments. The website includes information about Academic Integrity including referencing requirements for different disciplines. There is also information on Plagiarism and different ways to use source material.

Returning Assignments

Marked assignments will usually be returned through wattle.

Extensions and Penalties

Extensions and late submission of assessment pieces are covered by the Student Assessment (Coursework) Policy and Procedure. Extensions may be granted for assessment pieces that are not examinations or take-home examinations. If you need an extension, you must request an extension in writing on or before the due date. If you have documented and appropriate medical evidence that demonstrates you were not able to request an extension on or before the due date, you may be able to request it after the due date.

Resubmission of Assignments

No resubmission of assignments is permitted.

Privacy Notice

The ANU has made a number of third party, online, databases available for students to use. Use of each online database is conditional on student end users first agreeing to the database licensor’s terms of service and/or privacy policy. Students should read these carefully. In some cases student end users will be required to register an account with the database licensor and submit personal information, including their: first name; last name; ANU email address; and other information.
In cases where student end users are asked to submit ‘content’ to a database, such as an assignment or short answers, the database licensor may only use the student’s ‘content’ in accordance with the terms of service – including any (copyright) licence the student grants to the database licensor. Any personal information or content a student submits may be stored by the licensor, potentially offshore, and will be used to process the database service in accordance with the licensors terms of service and/or privacy policy.
If any student chooses not to agree to the database licensor’s terms of service or privacy policy, the student will not be able to access and use the database. In these circumstances students should contact their lecturer to enquire about alternative arrangements that are available.

Distribution of grades policy

Academic Quality Assurance Committee monitors the performance of students, including attrition, further study and employment rates and grade distribution, and College reports on quality assurance processes for assessment activities, including alignment with national and international disciplinary and interdisciplinary standards, as well as qualification type learning outcomes.

Since first semester 1994, ANU uses a grading scale for all courses. This grading scale is used by all academic areas of the University.

Support for students

The University offers students support through several different services. You may contact the services listed below directly or seek advice from your Course Convener, Student Administrators, or your College and Course representatives (if applicable).

• ANU Health, safety & wellbeing for medical services, counselling, mental health and spiritual support
• ANU Access and inclusion for students with a disability or ongoing or chronic illness
• ANU Dean of Students for confidential, impartial advice and help to resolve problems between students and the academic or administrative areas of the University
• ANU Academic Skills and Learning Centre supports you make your own decisions about how you learn and manage your workload.
• ANU Counselling Centre promotes, supports and enhances mental health and wellbeing within the University student community.
• ANUSA supports and represents undergraduate and ANU College students
• PARSA supports and represents postgraduate and research students